Skip to contents

Chromosomal coordinate for miRNA (hsa) from MiRBase v22

miRNA.coordinates.Rd

Chromosomal coordinates of Homo sapiens microRNAs. Note that all lower-case notation is used for miRNA names.

  • microRNAs: miRBase v22

  • genome-build-id: GRCh38

  • genome-build-accession: NCBI_Assembly:GCA_000001405.15

Hairpin precursor sequences have type "miRNA_primary_transcript". Note, these sequences do not represent the full primary transcript, rather a predicted stem-loop portion that includes the precursor miRNA. Mature sequences have type "miRNA".

Usage

miRNA.coordinates

Format

'miRNA.coordinates' A data frame with 3,619 rows and 7 columns:

name

miRNA name in all lower-case (e.g. "hsa-let-7b", "hsa-mir-100", ...)

chromosome

The chromosome the gene is located on.

position

Nucleotide coordinate on the chromosome.

type

Either "miRNA_primary_transcript" for heirpin precursor sequences or "miRNA" for mature sequences.

start.position, end.position

Starting and ending nucleotide coordinate on the chromosome.

id

Corresponding id (e.g. "MI0000063", "MI0000102")

...