Normalization By DESeq (DESeq)

Normalize the dataset using DESeq, and return the normalized dataset with scaling factor.

norm.DESeq(raw, groups)

Arguments

raw	raw count data in the format of data frame or matrix, with columns for samples and rows for genes.
groups	vector of characters indicating the group for each sample.

Value

list, containing dat.normed (normalized dataset) and scaling.factor (scaling factor) for each sample.

References

DESeq Package

Examples

test.DESeq <- norm.DESeq(data.test, data.group)
#> converting counts to integer mode